HL_2JPP_015

3D structure

PDB id

2JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis of RsmA/CsrA RNA recognition: Structure of RsmE bound to the Shine-Dalgarno sequence of hcnA mRNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CACGGAUG

Length

8 nucleotides

Bulged bases

2JPP|8|C|C|9, 2JPP|8|C|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JPP_015 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.0972

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

2JPP|8|C|C|7
2JPP|8|C|A|8
2JPP|8|C|C|9
2JPP|8|C|G|10
2JPP|8|C|G|11
2JPP|8|C|A|12
2JPP|8|C|U|13
2JPP|8|C|G|14

Current chains

Chain C

RNA (5'-R(*GP*GP*GP*CP*UP*UP*CP*AP*CP*GP*GP*AP*UP*GP*AP*AP*GP*CP*CP*C)-3')

Nearby chains

Chain A

Translational repressor

Chain B

Translational repressor