HL_2JYF_010

3D structure

PDB id

2JYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetraloop-receptor RNA complex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JYF_010 not in the Motif Atlas

Geometric match to HL_5FQ5_003

Geometric discrepancy: 0.1991

The information below is about HL_5FQ5_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

2JYF|5|B|G|62
2JYF|5|B|G|63
2JYF|5|B|A|64
2JYF|5|B|A|65
2JYF|5|B|A|66
2JYF|5|B|C|67

Current chains

Chain B

RNA (43-MER)

Nearby chains

Chain A

RNA (43-MER)