HL_2K4C_003

3D structure

PDB id

2K4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS data

Experimental method

SOLUTION NMR, SOLUTION SCATTERING

Resolution

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2K4C_003 not in the Motif Atlas

Homologous match to HL_1U0B_003

Geometric discrepancy: 0.3729

The information below is about HL_1U0B_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

2K4C|1|A|G|53
2K4C|1|A|U|54
2K4C|1|A|U|55
2K4C|1|A|C|56
2K4C|1|A|G|57
2K4C|1|A|A|58
2K4C|1|A|U|59
2K4C|1|A|C|60
2K4C|1|A|C|61

Current chains

Chain A

76-MER

Nearby chains