HL_2KD8_012

3D structure

PDB id

2KD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the stem-loop IIId of GBV-B IRES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGGGUU

Length

6 nucleotides

Bulged bases

2KD8|12|A|G|10, 2KD8|12|A|G|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2KD8_012 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3637

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

2KD8|12|A|G|9
2KD8|12|A|G|10
2KD8|12|A|G|11
2KD8|12|A|G|12
2KD8|12|A|U|13
2KD8|12|A|U|14

Current chains

Chain A

5'-R(*GP*GP*AP*UP*GP*GP*UP*UP*GP*GP*GP*GP*UP*UP*AP*GP*CP*CP*AP*UP*CP*C)-3'

Nearby chains