HL_2KHY_011

3D structure

PDB id

2KHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specifier Domain of B. subtilis tyrS T box leader RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACUUCGGU

Length

8 nucleotides

Bulged bases

2KHY|1|A|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2KHY_011 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3411

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

2KHY|1|A|A|16
2KHY|1|A|C|17
2KHY|1|A|U|18
2KHY|1|A|U|19
2KHY|1|A|C|20
2KHY|1|A|G|21
2KHY|1|A|G|22
2KHY|1|A|U|23

Current chains

Chain A

RNA (38-MER)

Nearby chains