HL_2LBS_014

3D structure

PDB id

2LBS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of double-stranded RNA binding domain of S. cerevisiae RNase III (Rnt1p) in complex with AAGU tetraloop hairpin

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAAGUG

Length

6 nucleotides

Bulged bases

2LBS|14|A|G|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2LBS_014 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.2239

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

2LBS|14|A|C|14
2LBS|14|A|A|15
2LBS|14|A|A|16
2LBS|14|A|G|17
2LBS|14|A|U|18
2LBS|14|A|G|19

Current chains

Chain A

RNA (32-MER)

Nearby chains

Chain B

Ribonuclease 3