HL_2M23_037

3D structure

PDB id

2M23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR solution structure of the d3'-hairpin of the group II intron Sc.ai5gamma including EBS1 bound to IBS1

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UAUUGGCACUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2M23|17|A|U|9
2M23|17|A|A|10
2M23|17|A|U|11
2M23|17|A|U|12
2M23|17|A|G|13
2M23|17|A|G|14
2M23|17|A|C|15
2M23|17|A|A|16
2M23|17|A|C|17
2M23|17|A|U|18
2M23|17|A|G|19
2M23|17|A|A|20
2M23|17|A|G|21

Current chains

Chain A

RNA (29-MER)

Nearby chains

Chain B

RNA_(5'-R(*CP*AP*GP*UP*GP*UP*C)-3')_