HL_2M24_016

3D structure

PDB id

2M24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR solution structure of the d3'-hairpin including the exon binding site 1 (EBS1) of the group II intron Sc.ai5gamma

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UUGGCACUGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2M24_016 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.182

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

2M24|16|A|U|11
2M24|16|A|U|12
2M24|16|A|G|13
2M24|16|A|G|14
2M24|16|A|C|15
2M24|16|A|A|16
2M24|16|A|C|17
2M24|16|A|U|18
2M24|16|A|G|19
2M24|16|A|A|20

Current chains

Chain A

RNA (29-MER)

Nearby chains