HL_2MIY_031

3D structure

PDB id

2MIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure of a preQ1 Class II riboswitch from Streptococcus pneumoniae

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GCUUAGCUUCUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2MIY_031 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.3373

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

2MIY|16|A|G|7
2MIY|16|A|C|8
2MIY|16|A|U|9
2MIY|16|A|U|10
2MIY|16|A|A|11
2MIY|16|A|G|12
2MIY|16|A|C|13
2MIY|16|A|U|14
2MIY|16|A|U|15
2MIY|16|A|C|16
2MIY|16|A|U|17
2MIY|16|A|U|18
2MIY|16|A|U|19
2MIY|16|A|C|20

Current chains

Chain A

RNA_(59-MER)

Nearby chains