HL_2MS0_019

3D structure

PDB id

2MS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure pf tRNApro:MLV-Nucleocapsid (1:2) Complex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUAGGGGUAUG

Length

11 nucleotides

Bulged bases

2MS0|7|B|G|16, 2MS0|7|B|G|18, 2MS0|7|B|G|19, 2MS0|7|B|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2MS0_019 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3607

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

2MS0|7|B|C|12
2MS0|7|B|U|13
2MS0|7|B|A|14
2MS0|7|B|G|15
2MS0|7|B|G|16
2MS0|7|B|G|18
2MS0|7|B|G|19
2MS0|7|B|U|20
2MS0|7|B|A|21
2MS0|7|B|U|22
2MS0|7|B|G|23

Current chains

Chain B

tRNApro

Nearby chains

Chain A

Nucleocapsid protein p10

Chain C

Nucleocapsid protein p10