HL_2O44_016

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACCUUAUGCGU

Length

11 nucleotides

Bulged bases

2O44|1|A|C|553, 2O44|1|A|U|554, 2O44|1|A|U|555, 2O44|1|A|G|558, 2O44|1|A|C|559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_016 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3307

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

2O44|1|A|A|551
2O44|1|A|C|552
2O44|1|A|C|553
2O44|1|A|U|554
2O44|1|A|U|555
2O44|1|A|A|556
2O44|1|A|U|557
2O44|1|A|G|558
2O44|1|A|C|559
2O44|1|A|G|560
2O44|1|A|U|561

Current chains

Chain A

23S rRNA

Nearby chains