HL_2O44_022

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

2O44|1|A|A|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_022 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.2359

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

2O44|1|A|U|792
2O44|1|A|G|793
2O44|1|A|A|794
2O44|1|A|A|795
2O44|1|A|A|796
2O44|1|A|A|797
2O44|1|A|G|798

Current chains

Chain A

23S rRNA

Nearby chains