HL_2O44_027

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

2O44|1|A|A|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_027 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.1566

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

2O44|1|A|G|1074
2O44|1|A|C|1075
2O44|1|A|U|1076
2O44|1|A|U|1077
2O44|1|A|A|1078
2O44|1|A|G|1079
2O44|1|A|A|1080
2O44|1|A|A|1081
2O44|1|A|G|1082
2O44|1|A|C|1083
2O44|1|A|A|1084
2O44|1|A|G|1085
2O44|1|A|C|1086

Current chains

Chain A

23S rRNA

Nearby chains