HL_2O44_035

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAUGGCUAUG

Length

11 nucleotides

Bulged bases

2O44|1|A|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_035 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.2351

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2O44|1|A|C|1466
2O44|1|A|U|1467
2O44|1|A|A|1468
2O44|1|A|U|1469
2O44|1|A|G|1470
2O44|1|A|G|1471
2O44|1|A|C|1472
2O44|1|A|U|1473
2O44|1|A|A|1474
2O44|1|A|U|1475
2O44|1|A|G|1476

Current chains

Chain A

23S rRNA

Nearby chains