HL_2O44_036

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAAUC

Length

7 nucleotides

Bulged bases

2O44|1|A|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_036 not in the Motif Atlas

Homologous match to HL_7A0S_037

Geometric discrepancy: 0.5417

The information below is about HL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39243.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2O44|1|A|G|1508
2O44|1|A|A|1509
2O44|1|A|A|1510
2O44|1|A|A|1511
2O44|1|A|A|1512
2O44|1|A|U|1513
2O44|1|A|C|1514

Current chains

Chain A

23S rRNA

Nearby chains