HL_2O44_038

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

2O44|1|A|A|1630, 2O44|1|A|A|1632, 2O44|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_038 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.2163

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

2O44|1|A|C|1628
2O44|1|A|G|1629
2O44|1|A|A|1630
2O44|1|A|C|1631
2O44|1|A|A|1632
2O44|1|A|C|1633
2O44|1|A|A|1634
2O44|1|A|G|1635

Current chains

Chain A

23S rRNA

Nearby chains