HL_2O44_040

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

2O44|1|A|U|1710, 2O44|1|A|C|1711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_040 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3326

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

2O44|1|A|C|1708
2O44|1|A|U|1709
2O44|1|A|U|1710
2O44|1|A|C|1711
2O44|1|A|G|1712
2O44|1|A|G|1713

Current chains

Chain A

23S rRNA

Nearby chains