HL_2O44_046

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

2O44|1|A|U|1894

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_046 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3705

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

2O44|1|A|G|1893
2O44|1|A|U|1894
2O44|1|A|A|1895
2O44|1|A|A|1896
2O44|1|A|C|1897
2O44|1|A|U|1898
2O44|1|A|A|1899
2O44|1|A|U|1900
2O44|1|A|A|1901
2O44|1|A|A|1902
2O44|1|A|C|1903

Current chains

Chain A

23S rRNA

Nearby chains