HL_2O44_049

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

2O44|1|A|A|2013, 2O44|1|A|A|2014, 2O44|1|A|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_049 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.1575

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

2O44|1|A|G|2010
2O44|1|A|U|2011
2O44|1|A|A|2012
2O44|1|A|A|2013
2O44|1|A|A|2014
2O44|1|A|G|2015
2O44|1|A|A|2016
2O44|1|A|U|2017
2O44|1|A|G|2018
2O44|1|A|C|2019

Current chains

Chain A

23S rRNA

Nearby chains