HL_2O44_052

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

2O44|1|A|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1383

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

2O44|1|A|C|2227
2O44|1|A|U|2228
2O44|1|A|G|2229
2O44|1|A|G|2230
2O44|1|A|G|2231
2O44|1|A|G|2232
2O44|1|A|C|2233
2O44|1|A|G|2234
2O44|1|A|G|2235

Current chains

Chain A

23S rRNA

Nearby chains