HL_2O44_068

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAGAAACUGGCCGGUCGGUGGCC

Length

24 nucleotides

Bulged bases

2O44|1|A|A|2117, 2O44|1|A|A|2118, 2O44|1|A|G|2139, 2O44|1|A|G|2140

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|G|2107
2O44|1|A|G|2108
2O44|1|A|A|2109
2O44|1|A|G|2110
2O44|1|A|A|2117
2O44|1|A|A|2118
2O44|1|A|A|2119
2O44|1|A|C|2120
2O44|1|A|U|2121
2O44|1|A|G|2122
2O44|1|A|G|2123
2O44|1|A|C|2124
2O44|1|A|C|2125
2O44|1|A|G|2132
2O44|1|A|G|2133
2O44|1|A|U|2134
2O44|1|A|C|2135
2O44|1|A|G|2136
2O44|1|A|G|2137
2O44|1|A|U|2138
2O44|1|A|G|2139
2O44|1|A|G|2140
2O44|1|A|C|2157
2O44|1|A|C|2158

Current chains

Chain A

23S rRNA

Nearby chains