HL_2O44_070

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGGGAACUGAAACAUCUCAGUACCU

Length

25 nucleotides

Bulged bases

2O44|1|A|A|173, 2O44|1|A|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|A|163
2O44|1|A|G|164
2O44|1|A|G|165
2O44|1|A|G|166
2O44|1|A|A|167
2O44|1|A|A|168
2O44|1|A|C|169
2O44|1|A|U|170
2O44|1|A|G|171
2O44|1|A|A|172
2O44|1|A|A|173
2O44|1|A|A|174
2O44|1|A|C|175
2O44|1|A|A|176
2O44|1|A|U|177
2O44|1|A|C|178
2O44|1|A|U|179
2O44|1|A|C|180
2O44|1|A|A|181
2O44|1|A|G|182
2O44|1|A|U|183
2O44|1|A|A|184
2O44|1|A|C|185
2O44|1|A|C|186
2O44|1|A|U|187

Current chains

Chain A

23S rRNA

Nearby chains