HL_2O45_025

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

2O45|1|A|U|969, 2O45|1|A|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_025 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2582

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2O45|1|A|A|966
2O45|1|A|G|967
2O45|1|A|C|968
2O45|1|A|U|969
2O45|1|A|A|970
2O45|1|A|A|971
2O45|1|A|C|972
2O45|1|A|U|973

Current chains

Chain A

23S rRNA

Nearby chains