HL_2O45_034

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUCAAGAUUCC

Length

12 nucleotides

Bulged bases

2O45|1|A|U|1409, 2O45|1|A|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_034 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3185

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

2O45|1|A|G|1401
2O45|1|A|G|1402
2O45|1|A|U|1403
2O45|1|A|C|1404
2O45|1|A|A|1405
2O45|1|A|A|1406
2O45|1|A|G|1407
2O45|1|A|A|1408
2O45|1|A|U|1409
2O45|1|A|U|1410
2O45|1|A|C|1411
2O45|1|A|C|1412

Current chains

Chain A

23S rRNA

Nearby chains