HL_2O45_041

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAACUUCGGAAGAAG

Length

17 nucleotides

Bulged bases

2O45|1|A|U|1710, 2O45|1|A|C|1711, 2O45|1|A|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_041 not in the Motif Atlas

Homologous match to IL_4WF9_066

Geometric discrepancy: 0.291

The information below is about IL_4WF9_066

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

2O45|1|A|C|1703
2O45|1|A|G|1704
2O45|1|A|U|1705
2O45|1|A|A|1706
2O45|1|A|A|1707
2O45|1|A|C|1708
2O45|1|A|U|1709
2O45|1|A|U|1710
2O45|1|A|C|1711
2O45|1|A|G|1712
2O45|1|A|G|1713
2O45|1|A|A|1714
2O45|1|A|A|1715
2O45|1|A|G|1716
2O45|1|A|A|1717
2O45|1|A|A|1718
2O45|1|A|G|1719

Current chains

Chain A

23S rRNA

Nearby chains