HL_2O45_052

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

2O45|1|A|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_052 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.1784

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

2O45|1|A|C|2227
2O45|1|A|U|2228
2O45|1|A|G|2229
2O45|1|A|G|2230
2O45|1|A|G|2231
2O45|1|A|G|2232
2O45|1|A|C|2233
2O45|1|A|G|2234
2O45|1|A|G|2235

Current chains

Chain A

23S rRNA

Nearby chains