HL_2O45_059

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_059 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.2675

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

2O45|1|A|A|2450
2O45|1|A|G|2451
2O45|1|A|U|2452
2O45|1|A|C|2453
2O45|1|A|C|2454
2O45|1|A|A|2455
2O45|1|A|U|2456
2O45|1|A|A|2457
2O45|1|A|U|2458

Current chains

Chain A

23S rRNA

Nearby chains