HL_2O45_065

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

2O45|1|A|G|2731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.4348

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

2O45|1|A|C|2725
2O45|1|A|U|2726
2O45|1|A|G|2727
2O45|1|A|A|2728
2O45|1|A|A|2729
2O45|1|A|A|2730
2O45|1|A|G|2731
2O45|1|A|C|2732
2O45|1|A|A|2733
2O45|1|A|U|2734
2O45|1|A|C|2735
2O45|1|A|U|2736
2O45|1|A|A|2737
2O45|1|A|A|2738
2O45|1|A|G|2739

Current chains

Chain A

23S rRNA

Nearby chains