HL_2O45_067

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

2O45|1|A|A|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1938

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

2O45|1|A|G|2794
2O45|1|A|A|2795
2O45|1|A|A|2796
2O45|1|A|G|2797
2O45|1|A|A|2798
2O45|1|A|C|2799
2O45|1|A|C|2800
2O45|1|A|A|2801
2O45|1|A|C|2802

Current chains

Chain A

23S rRNA

Nearby chains