HL_2O45_077

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUAGCAAUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_077 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2984

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

2O45|1|A|A|2829
2O45|1|A|U|2830
2O45|1|A|A|2831
2O45|1|A|G|2832
2O45|1|A|C|2833
2O45|1|A|A|2834
2O45|1|A|A|2835
2O45|1|A|U|2836
2O45|1|A|G|2837
2O45|1|A|U|2838

Current chains

Chain A

23S rRNA

Nearby chains