HL_2OJ8_007

3D structure

PDB id

2OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of the UGUU tetraloop of Duck Epsilon apical stem loop of the Hepatitis B virus

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUGUUG

Length

6 nucleotides

Bulged bases

2OJ8|7|A|G|14, 2OJ8|7|A|U|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OJ8_007 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.3827

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

2OJ8|7|A|C|12
2OJ8|7|A|U|13
2OJ8|7|A|G|14
2OJ8|7|A|U|15
2OJ8|7|A|U|16
2OJ8|7|A|G|17

Current chains

Chain A

5'-R(P*GP*CP*UP*GP*UP*UP*GP*U)-3'

Nearby chains