HL_2OTJ_052

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGCGGAGUC

Length

10 nucleotides

Bulged bases

2OTJ|1|0|C|2071, 2OTJ|1|0|G|2072, 2OTJ|1|0|G|2073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTJ_052 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.0284

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

2OTJ|1|0|G|2068
2OTJ|1|0|U|2069
2OTJ|1|0|G|2070
2OTJ|1|0|C|2071
2OTJ|1|0|G|2072
2OTJ|1|0|G|2073
2OTJ|1|0|A|2074
2OTJ|1|0|G|2075
2OTJ|1|0|U|2076
2OTJ|1|0|C|2077

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain Y

50S ribosomal protein L32e