HL_2OTJ_064

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GU(OMU)(OMG)UUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTJ_064 not in the Motif Atlas

Homologous match to HL_4V9F_064

Geometric discrepancy: 0.0501

The information below is about HL_4V9F_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OTJ|1|0|G|2585
2OTJ|1|0|U|2586
2OTJ|1|0|OMU|2587
2OTJ|1|0|OMG|2588
2OTJ|1|0|U|2589
2OTJ|1|0|U|2590
2OTJ|1|0|C|2591
2OTJ|1|0|G|2592
2OTJ|1|0|C|2593

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P