HL_2OTL_009

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUCACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OTL_009 not in the Motif Atlas

Homologous match to HL_4V9F_009

Geometric discrepancy: 0.097

The information below is about HL_4V9F_009

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

2OTL|1|0|C|252
2OTL|1|0|U|253
2OTL|1|0|C|254
2OTL|1|0|A|255
2OTL|1|0|C|256
2OTL|1|0|G|257

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e