HL_2PXL_001

3D structure

PDB id

2PXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Variant 9 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2PXL_001 not in the Motif Atlas

Geometric match to HL_5FJC_002

Geometric discrepancy: 0.0738

The information below is about HL_5FJC_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

2PXL|1|B|C|153
2PXL|1|B|G|154
2PXL|1|B|A|155
2PXL|1|B|A|156
2PXL|1|B|A|157
2PXL|1|B|G|158

Current chains

Chain B

4.5 S RNA

Nearby chains