HL_2QA4_055

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

2QA4|1|0|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QA4_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.0892

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

2QA4|1|0|C|2281
2QA4|1|0|U|2282
2QA4|1|0|G|2283
2QA4|1|0|G|2284
2QA4|1|0|G|2285
2QA4|1|0|G|2286
2QA4|1|0|C|2287
2QA4|1|0|G|2288
2QA4|1|0|G|2289

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain H

50S ribosomal protein L10e