HL_2QA4_056

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

2QA4|1|0|A|2302, 2QA4|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QA4_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0643

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

2QA4|1|0|C|2298
2QA4|1|0|G|2299
2QA4|1|0|A|2300
2QA4|1|0|A|2301
2QA4|1|0|A|2302
2QA4|1|0|A|2303
2QA4|1|0|G|2304
2QA4|1|0|A|2305
2QA4|1|0|U|2306
2QA4|1|0|A|2307
2QA4|1|0|U|2308
2QA4|1|0|C|2309
2QA4|1|0|G|2310

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S ribosomal protein L10e

Chain Q

50S ribosomal protein L21e