HL_2QA4_060

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QA4_060 not in the Motif Atlas

Homologous match to HL_4V9F_060

Geometric discrepancy: 0.0719

The information below is about HL_4V9F_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

2QA4|1|0|C|2411
2QA4|1|0|G|2412
2QA4|1|0|A|2413
2QA4|1|0|A|2414
2QA4|1|0|A|2415
2QA4|1|0|G|2416

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e