HL_2QA4_061

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUUGAUGC

Length

9 nucleotides

Bulged bases

2QA4|1|0|C|2443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QA4_061 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.113

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

2QA4|1|0|G|2442
2QA4|1|0|C|2443
2QA4|1|0|U|2444
2QA4|1|0|U|2445
2QA4|1|0|G|2446
2QA4|1|0|A|2447
2QA4|1|0|U|2448
2QA4|1|0|G|2449
2QA4|1|0|C|2450

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain L

50S ribosomal protein L15P

Chain M

50S ribosomal protein L15e