HL_2QA4_069

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUACAAGAC

Length

9 nucleotides

Bulged bases

2QA4|1|0|U|2837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QA4_069 not in the Motif Atlas

Homologous match to HL_4V9F_069

Geometric discrepancy: 0.0926

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

2QA4|1|0|G|2836
2QA4|1|0|U|2837
2QA4|1|0|A|2838
2QA4|1|0|C|2839
2QA4|1|0|A|2840
2QA4|1|0|A|2841
2QA4|1|0|G|2842
2QA4|1|0|A|2843
2QA4|1|0|C|2844

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S RIBOSOMAL PROTEIN L31E