HL_2QBZ_003

3D structure

PDB id

2QBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the M-Box Riboswitch Aptamer Domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGCC

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QBZ_003 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.3344

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

2QBZ|1|X|G|126
2QBZ|1|X|G|127
2QBZ|1|X|C|136
2QBZ|1|X|C|137

Current chains

Chain X

M-Box RNA, ykoK riboswitch aptamer

Nearby chains