HL_2QEX_004

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAA

Length

3 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QEX_004 not in the Motif Atlas

Homologous match to HL_4V9F_004

Geometric discrepancy: 0.3463

The information below is about HL_4V9F_004

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

2QEX|1|0|U|125
2QEX|1|0|A|128
2QEX|1|0|A|129

Current chains

Chain 0

23S ribosomal RNA

Nearby chains