HL_2QEX_052

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGCGGAGUC

Length

10 nucleotides

Bulged bases

2QEX|1|0|C|2071, 2QEX|1|0|G|2072, 2QEX|1|0|G|2073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QEX_052 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.0556

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

2QEX|1|0|G|2068
2QEX|1|0|U|2069
2QEX|1|0|G|2070
2QEX|1|0|C|2071
2QEX|1|0|G|2072
2QEX|1|0|G|2073
2QEX|1|0|A|2074
2QEX|1|0|G|2075
2QEX|1|0|U|2076
2QEX|1|0|C|2077

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain Y

50S ribosomal protein L32e