HL_2QEX_069

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUACAAGAC

Length

9 nucleotides

Bulged bases

2QEX|1|0|U|2837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QEX_069 not in the Motif Atlas

Homologous match to HL_4V9F_069

Geometric discrepancy: 0.0438

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

2QEX|1|0|G|2836
2QEX|1|0|U|2837
2QEX|1|0|A|2838
2QEX|1|0|C|2839
2QEX|1|0|A|2840
2QEX|1|0|A|2841
2QEX|1|0|G|2842
2QEX|1|0|A|2843
2QEX|1|0|C|2844

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e