HL_2QEX_073

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

2QEX|1|0|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2QEX|1|0|U|1169
2QEX|1|0|U|1170
2QEX|1|0|A|1171
2QEX|1|0|G|1172
2QEX|1|0|A|1173
2QEX|1|0|A|1174
2QEX|1|0|G|1175
2QEX|1|0|C|1176
2QEX|1|0|A|1177

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11P