HL_2QEX_076

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UACCCAUCCCGAACA

Length

15 nucleotides

Bulged bases

2QEX|1|9|C|3040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2QEX_076 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.0628

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

2QEX|1|9|U|3033
2QEX|1|9|A|3034
2QEX|1|9|C|3035
2QEX|1|9|C|3036
2QEX|1|9|C|3037
2QEX|1|9|A|3038
2QEX|1|9|U|3039
2QEX|1|9|C|3040
2QEX|1|9|C|3041
2QEX|1|9|C|3042
2QEX|1|9|G|3043
2QEX|1|9|A|3044
2QEX|1|9|A|3045
2QEX|1|9|C|3046
2QEX|1|9|A|3047

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P