HL_2RD2_002

3D structure

PDB id

2RD2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUUCUGAUU

Length

9 nucleotides

Bulged bases

2RD2|1|B|C|934, 2RD2|1|B|G|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2RD2_002 not in the Motif Atlas

Geometric match to HL_4JXZ_002

Geometric discrepancy: 0.1146

The information below is about HL_4JXZ_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

2RD2|1|B|A|931
2RD2|1|B|U|932
2RD2|1|B|U|933
2RD2|1|B|C|934
2RD2|1|B|U|935
2RD2|1|B|G|936
2RD2|1|B|A|937
2RD2|1|B|U|938
2RD2|1|B|U|939

Current chains

Chain B

Glutamine tRNA

Nearby chains

Chain A

Glutaminyl-tRNA synthetase