HL_2RD2_003

3D structure

PDB id

2RD2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2RD2_003 not in the Motif Atlas

Geometric match to HL_1U0B_003

Geometric discrepancy: 0.1399

The information below is about HL_1U0B_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

2RD2|1|B|G|953
2RD2|1|B|U|954
2RD2|1|B|U|955
2RD2|1|B|C|956
2RD2|1|B|G|957
2RD2|1|B|A|958
2RD2|1|B|A|959
2RD2|1|B|U|960
2RD2|1|B|C|961

Current chains

Chain B

Glutamine tRNA

Nearby chains