HL_2UU9_008

3D structure

PDB id

2UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UU9_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0664

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2UU9|1|A|C|320
2UU9|1|A|A|321
2UU9|1|A|C|322
2UU9|1|A|U|323
2UU9|1|A|G|324
2UU9|1|A|A|325
2UU9|1|A|G|326
2UU9|1|A|A|327
2UU9|1|A|C|328
2UU9|1|A|A|329
2UU9|1|A|C|330
2UU9|1|A|G|331
2UU9|1|A|G|332
2UU9|1|A|G|333

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20