HL_2UU9_018

3D structure

PDB id

2UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

2UU9|1|A|U|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UU9_018 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2702

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

2UU9|1|A|G|837
2UU9|1|A|G|838
2UU9|1|A|U|839
2UU9|1|A|C|840
2UU9|1|A|U|841
2UU9|1|A|C|848
2UU9|1|A|C|849

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain R

30S RIBOSOMAL PROTEIN S18